Scaffold Ga0209644_1005432

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1005432
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2549
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013189	Metagenome / Metatranscriptome	273	Y
F050757	Metagenome / Metatranscriptome	145	Y
F077378	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10054323	F077378	N/A	MQLLSRGKHTMPKAKKKEEVPQNVVSIDGSEYEFDSLVDEAKFAISHIAQLEGEMNALQMKLVQLNAAKSVFMAQLKESLPE
Ga0209644_10054325	F050757	N/A	MKKKDGTTEYSWSELAYRIDPELSAPEKVYVFDNGNKVFYQPRKRINVNHARNRKKS
Ga0209644_10054326	F013189	GAG	MQEIEKNLKFIGQDHALAKNVAEHLEKKYPGWLWAVHVMDGVVGVKSMRLSGQWGFILHEDKIDNDYKAVTRAGGEILERYRQSTNGFNQTKYNDLVMDHRGQLNGDFS