Scaffold Ga0209644_1004779

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1004779
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2693
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F059371	Metagenome	134	Y
F101893	Metagenome	102	N
F101914	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100477910	F022285	AGGAG	MVKIKKPQTIVKWGNEDVTILELFKELDKLVCDPVRSMQDMDTEMYISDYQKLSQAQWRISNTLQELKDD
Ga0209644_100477913	F101893	GGAGG	MTFIVIQMENPLDLESISVLPDENDLKVKQFRNEEEAVKFLVKYGMIEELNRNA
Ga0209644_10047793	F059371	AGGAG	MFIFLIFPLVFGIANSDALNTFHNEMEAGAKWHHVGEQDLDPNAKSIDLNGKIYYKLRKD
Ga0209644_10047799	F101914	AGGAG	MTTNWTCSNCGCVHWDGLKPISCIMCDNDEFLDGPEKYYKESFSKQTNYVKEKKDGKD