Scaffold Ga0209644_1004763

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1004763
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2698
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037414	Metagenome / Metatranscriptome	168	Y
F043614	Metagenome / Metatranscriptome	156	Y
F045140	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10047635	F043614	N/A	MKNITLTFERKSNTVWSDGDDYYATYVHEPTKSKWKILWQYSQCGEHIGSIQKLVTTGSTTSQGGERITWEYQGEVFRFKKLEQGLKVELDLLESDETYESVSRALATPPPSLESEPQEERVSFEPEMPNLRENPLGWA
Ga0209644_10047636	F037414	N/A	MDKILDKNGLEIEVGQIVKIKSNDVEDCVVCGFDNGRIDVIELGEGFTIDGDEIEVVSELNG
Ga0209644_10047638	F045140	GAGG	MIRLLTIFLLSASIAQSVSMKIKVAHQKVTHMNQPYGSPGGIYFEIKDMDPLLPYWVQYSHDFKIWKDLYNFGSFGTNSTSPLFHWYELPPEKCFFRIIQKW