Scaffold Ga0209644_1004384

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1004384
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2796
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006323	Metagenome	376	Y
F011035	Metagenome	296	Y
F020789	Metagenome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10043842	F020789	AGGAG	MANNTNKYFTWYVKSRDKICTFLGADEFDGFVSRQWTDRNGNECYNFWDIQAKHPRTAVNCKWRNA
Ga0209644_10043843	F011035	GGAG	MICIDKILLIIIIAPIIVGAIYSLNKNKRDKLQDWKPHE
Ga0209644_10043846	F006323	AGGAG	MPLGKNTHRLGNLTKDDINFPKHLTPEIVHTALYIHNAPSKEDIVKRTEYCAKQIGNEAMQYAMALLVLPHLIDKTKDSEEYQDFLSSRKKTIN