Scaffold Ga0209644_1003105

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1003105
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3211
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026289	Metagenome	198	Y
F041246	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10031052	F026289	GGTGG	MSLKQERRSDRNEDEVFIDTLVKMLAEPHKDLIWNEKFKITVRKHFDI
Ga0209644_10031057	F041246	GAG	MKYVIGITKRFSYTKSENHTKKGRKHFFCYEYSMESGEFKRIRISTIKAIYYKITFIFGLKSKKVTNVYCKDCRKSYDCLVNFWDKNLDCPYC