Scaffold Ga0209644_1002765

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1002765
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001922	Metagenome	617	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10027651	F001712	N/A	RRRRLPSRKKVSKSIGSQWGKISKGAGVLAFLSNVTGSDMAASTGQPIGARAQNFGNSLLGRISGYTPFKNAAGANTPQTIGIDGIFNKFSGIGLGTLIYGMLPVKMLPHKGKAKTLGKSLLTAGVLSGLFMPTNNRSSNLIAPSRAITVSSSEVSYT
Ga0209644_10027652	F001606	GAGG	MTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTESTNGAEQYYTRPTNETAGATAANTRTEGGSMTIQGGNEITGLYTVVSGASATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0209644_10027653	F000704	AGG	VAKMPHTNGEIQPSKVKSISVYDTASYGMDLFLPFTDVGLTETSITFSTSTVTRDLEDSNQPMDDFPAVYSNVDTSVLLNSGNDTAFSRTYSYNPDMTAIIYAIHLSFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHFFQRDVVETILVRKGNPIDILVELITVKTGTNTRQEGVVALAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSTLGQ
Ga0209644_10027654	F000730	GGA	VWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSIHTDSQIDDLINNAPRILNEINKTIAEQKSAGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKAI
Ga0209644_10027655	F001922	AGG	MVIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWVTKLFTSGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKEKQEKPNVTTTAVFAMIGLGLSLITFPQIIQKVKEMRILNGQT