Scaffold Ga0209644_1002512

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1002512
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3497
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002743	Metagenome / Metatranscriptome	533	Y
F046423	Metagenome	151	Y
F067829	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100251210	F002743	AGGA	MKNEDTVYHDLLDHVLHLLEHKLPVEMVAAALMAIAQRLYRTHLSEKDYQRIMKIAYETNVEPYDLTNGTLH
Ga0209644_100251212	F067829	N/A	MSKKIPQQYEIGEEMPEEDKSVEIDLKRHNFKSKIEREIPHGLTKVQEAIWILKNKKK
Ga0209644_10025128	F046423	GAG	MSPTERAYVAGIIDGEGWVEYRYVQRRRNTRPGKPIYRTLIVRMEVPQVDGRLIDYLMETTAEGNRDIKRFPKNPNAKDQHRWRVSHHGVYRILKQVYKHLIVKKEKAKLVIDHYDKKFAKKVFGKGGFGVK