Scaffold Ga0209644_1002469

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1002469
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3528
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F037944	Metagenome / Metatranscriptome	167	Y
F040860	Metagenome	161	N
F043620	Metagenome / Metatranscriptome	156	Y
F074035	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10024691	F040860	N/A	TIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEEVTITP
Ga0209644_10024693	F003481	N/A	MDDLQEELRLAREELERLKTPEDKSDKIQMTSGDIVRLVIAAPVVFTWLFLGSRVIISATTSQAVLGNIEPLLLALSILTIPVTGILASLFKVDGNGK
Ga0209644_10024696	F037944	GGCGG	MTRRISNRLNNGLDRDGFTLGVSLDWSHVFLGICGLGFSAVIFFVGLAYGIGVLCDS
Ga0209644_10024697	F043620	GGA	MRFLALTVLAGMVAVTGGVLMLGWLYEGPRRLVRIAACYIGIHGRETWGVNPANENSEPYCQDCGRFPQKVY
Ga0209644_10024699	F074035	GAGG	MDRGLLIHFKMDRPRDHWREVSCLEIGCVNYATGWKTILPVDDTANIEMIRRSGMGFREEREDGLVTFTFTPGQ