Scaffold Ga0209644_1002080

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1002080
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3795
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F007005	Metagenome	360	Y
F011673	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10020802	F007005	N/A	MFNNKGESKMDKTILVVEIITYSNGKKYYNLKKSAPNLEKASEYLVSLKNLNEDKETTYELFNRFGQFEVEEIQKVAND
Ga0209644_10020803	F000423	AGGTGG	MIKQAIFYIKYYAKKHDCIIERKATLDDNCFEGRHKKFGYPYKKYIDVWATEEINNGQPQYRTASKKWEINDEQTLDI
Ga0209644_10020804	F011673	GGA	MTSKLSTFKVLPIYLQPRILSAVSYVHVAPNKEIALERIEKLSKKLSDREMIYVMSLLVFDNILDSVKNSDEFKNFIQAKKDRTIH