Scaffold Ga0209644_1001904

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1001904
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3942
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001494	Metagenome	683	Y
F002743	Metagenome / Metatranscriptome	533	Y
F015479	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10019041	F002743	GGA	MKDEDKIYHDLLDHVLHLLEHKLPVEMVAAALMAIAQRLYKTHLSPEDYQRIMKIAYETNVE
Ga0209644_100190411	F001494	N/A	MKGKINMQKRKKKDPVKEFQKQCVDQRIDLFYVADRVRGILECKTDAKLRDELAEFKDECVHNIGTNALIERYEY
Ga0209644_10019048	F015479	N/A	MKILIILGTSAILTFPMDKSIKPDCFSQGHAILQKLATYQGPGPEQGWYLNGTKIQVAGFYCD