Scaffold Ga0209644_1001765

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1001765
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4060
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F007035	Metagenome	359	Y
F071308	Metagenome	122	Y
F081433	Metagenome / Metatranscriptome	114	Y
F085809	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10017651	F081433	GGA	MTIKHFKNLPHYLQPRIISAVSYIHRVSPDMAEASKRINKLAKVLSPKELMYVMSLLVFDKLLDMVADSDEFKKIIPTKRTIN
Ga0209644_100176510	F085809	N/A	MMFKTIKWNTGSAARRFRLKNKKKLKKNKSTSPQAGGPAHKESGFKQG
Ga0209644_10017652	F000423	AGTAG	MVVIMQLNKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGEPQYRTASKKWEINDHQTL
Ga0209644_10017657	F071308	AGG	MPYFRDEDKKTRDNSWTDEAQDVLVLAIQTLDEECFKQIQDDKTPLGNLRHRVDLILNSRHWEKKREEKK
Ga0209644_10017658	F007035	AGGAG	MDKYYILQEQHDSFYTEPLANDEFTSLQAAEKKLAAIRELDPKGKYFLVTRLQA