Scaffold Ga0209644_1001611

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1001611
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4233
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F042643	Metagenome	158	Y
F046089	Metagenome	152	Y
F061374	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10016112	F042643	N/A	VGFKLKTGKTINKVLAGAGVVALLSIAGNMVAPGFMNSTMGKAVEGIAAYSIGGVESVIGAAATMLIGPRITGSTSLDNTLTESL
Ga0209644_10016114	F046089	GAGG	LPSVIQGFVVTTKPKDVTLESFPTVDHIATGATTTIVYPSQYMGVAISAAIINQDGTNTCTISLNGSTSFTLSAGGAFNVNDQNIISVKVTAGAAGGVDVVAQVAPTLLTTEAQRFGIVR
Ga0209644_10016116	F061374	AGGGGG	MDWISAPTKVASEAARNVGGIKASKTISLPISYWALLEEVRSHKGFKNGNETLCYVIMEKAKDLGIET
Ga0209644_10016117	F002667	N/A	VEIEVLSASLILVASICGGMCAVFIARSKSTVNKHSRQRIKDFENDIQYLADSKKEEAKDYRHEIMRLKNVVSQAKEGTAVTETDMKNSGLGEVIMQLIPRKYKKAASFLVPQIEEAVKKDPTIVERIYEKIKSANSKQAQVQPQAETTNSL