Scaffold Ga0209644_1001466

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1001466
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4395
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F075462	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10014662	F002667	AGG	MFYIPFMTFLSPSKHLELCNNALLHVEVEVLSASLILVASLCGGMCAVFIARSKSTVNKHSRQRIKDFENDIKYLADSKKEEAQDYRKEIMRLKNVATKAKEGTSISDTDMKNSGLGEVIMQLIPNKYRKAASFLVPQVEEAVKRDPAIVERIYEKIKSANSSNKQAQPATEDQTTATL
Ga0209644_10014663	F075462	N/A	MTLDPDYVTKAERERRRQTAHKETKVAKTISIPISYWALLDQVKNKLGKKNVNETLCYCIKEIGIGEGIEQ
Ga0209644_10014666	F017252	AGGTGG	VPQIIQGYRVTVKPNDTTAESTYVSDVIAGGAGATTVHYPTLYRAIAISIAIKNQDAANACTFSVNGQPAVTLSAGSDQNINGQNIVSVQVTPGAAGSTDILAQVTPMYLSTEAARFRTDRG