Scaffold Ga0209644_1001176

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1001176
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4843
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002380	Metagenome	566	Y
F011407	Metagenome	291	Y
F077396	Metagenome	117	Y
F101333	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10011761	F101333	AGG	MPLGKRQQRLGNLTKEGINFPKHLTPEIVHTALYIHNAPSKE
Ga0209644_100117610	F011407	N/A	MKTLKQEWLDRAKEAGVKDPDPNNRMCQAFAHFDGPGWNKFTMAALIIDLSEQLDKLEDNDNFYKQWNASQRSH
Ga0209644_10011763	F077396	N/A	MLNVLDNYERRKQMFNLEKTKKHIAMTSDTRGKQIDMQQECEDLYGVDQKLLSWAYANISTKELKKIIKKEEEEMERLK
Ga0209644_10011765	F002380	GGAG	MIASLLGILGGFILLMLGVIVGIHTIHMTVGLLMMFAGLVSMLNFLPHYKEYKDE