NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000976

Scaffold Ga0209644_1000976


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000976 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5264
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011408Metagenome / Metatranscriptome291Y
F013189Metagenome / Metatranscriptome273Y
F050757Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10009763F050757GGAMTKKKDGTTVWQWSELAYKVDPELSAPEKEYIFNNGNRVFYKPRKRINVKYGNRKKS
Ga0209644_10009764F013189AGGAMEIEKNLKFVAQEHTVAKNVAEHLEKKYPGWLWAVHVMDGTVVVKSMRLSGNWGFVLHEDKIDNDYISVTRAGGEILERFRQKTSGFNQDRYMDLTMDHRNQLDGDFSPGTS
Ga0209644_10009766F011408N/AMSMDYYDPTDVNVDELIKRVRIGRSTEELIRTPTGSSLISRATQDYREGIEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARYKDTGEI

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