Scaffold Ga0209644_1000862

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000862
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5549
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023875	Metagenome	208	N
F035334	Metagenome / Metatranscriptome	172	Y
F048555	Metagenome	148	N
F049935	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100086211	F035334	GGA	MQARNTYQDVPVEIIKRFVLNKIGELDEVQLTRVYELISGNTCLQKAKDNCVNIIVNKEHNWK
Ga0209644_10008623	F023875	N/A	MVTFLYGVLAIILCLYDITFTHSLFWIIMLLFSLIQFFAYANGLRAQLERQFLKDYNEAVKKTLEEQQQEEYNQIRNN
Ga0209644_10008624	F048555	N/A	MKSVTITIGDYDLEIIEQLFENEEKFEPSDPRDELMIEVMRQVKDNPKVDLGADEAAEHEKAKTRFSKNLGADGKRIVKRELPITNKIS
Ga0209644_10008625	F049935	N/A	MQTDIDFEFWDAQIKHFISIIKSDSASKKNKKAAKTHLIEIQSRLKRDVRDLNKHIKELEAQL