NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1000852

Scaffold Ga0209644_1000852


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1000852 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5588
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F007647Metagenome / Metatranscriptome347Y
F015879Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10008522F007647AGGAGLDQAKVSDVINEFFHSLKTEEDRMLETGLTHNTTVELLHQATLQLVKDNPKRFEQYVKFFEEGCMYLNDDTDFIPEVEK
Ga0209644_10008523F001594GGAGMEKTKITKNEYLDSLDPDNLNLEKSDLIDFCHRCIAEWKSNKIANFKYILAMELMIGAVRVTPEDVMKKVWKKILVWFWDLQFQNALAEKDGMLKELREIGSG
Ga0209644_10008529F015879AGGAGMKKDEVIIITCNVCGAMSHAVKTKIPKGYYVKDEFVLCKICFGDLK

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