Scaffold Ga0209644_1000602

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000602
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6659
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F000874	Metagenome / Metatranscriptome	851	Y
F018195	Metagenome	236	Y
F021553	Metagenome / Metatranscriptome	218	Y
F042381	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100060215	F021553	AGGA	MSDSVKYKTVSLKAEVYSKLEEISKLMTKGVKLSIPQTIELLLKQEEGNQELKAGWGK
Ga0209644_100060216	F042381	GGTGG	MLKSQELEKVMRMFNDKSTVAKEARVSIELPDKSLWDVGEIFLAANKIIGSRETHRIVIRINKEIASPGSLLWKL
Ga0209644_10006022	F000567	GGAG	MKENLLKLTQKITTWHESMFRYLTRKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGL
Ga0209644_10006025	F000874	GAG	MKIIMILATGALLTFPTMEDIKPDCSSQGYAILEKLATYHGPGPNQGWVLNDSNLQVGGWYCE
Ga0209644_10006028	F018195	GAGG	MSYKAICDNCSGNGHINIVDAKGKTQVKQCWMCESEGEIKYEEDFINKLIRNHHHRLQ