Scaffold Ga0209644_1000519

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000519
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7156
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F038274	Metagenome	166	Y
F046014	Metagenome	152	N
F080153	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100051914	F038274	AGGAG	MTESTYQLQKHNGEYVLVSSDSSKPTIRLGTDDIEIAKARAKPHMNFM
Ga0209644_100051916	F046014	AGGAG	MSIRKRVYLNKPQAEGLIQIFRRSQLLDLLVYVAIYNKNKSPHYKLCIDCPLDTHPRLTNKLQDVLHTLIDRHGNALKKLEWEEYDDAETPIETLGLTPDFKEYVEGKEKEND
Ga0209644_100051917	F036930	AGGAG	MTEYTHLIEEARQQQAFREWRNHPLYIQAQNGQIEIKYQDGRTEIEDTSTGKKTYDFPKGYEGQPYKEKLFDKFLKIFTE
Ga0209644_10005192	F080153	AGGAGG	MQFKLTDEFGRALVLGAEFDVKELTINGVRIVVEGEIKVDANAELISPTEQRELPLN