Scaffold Ga0209644_1000497

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000497
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7363
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F001136	Metagenome / Metatranscriptome	767	Y
F004908	Metagenome / Metatranscriptome	419	Y
F012880	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100049710	F001136	AGG	MVVDDTIAQALTRIADAIEENGDTLKRIADHYDGVVPVMTRNAKRAEAQAEEADQSFGQQVRDIFRPQEN
Ga0209644_100049712	F012880	GGAGG	MRFNIVTFIWSIAVVLLTFQVFMLGYDWEFTNTLAYKFMLLLDGFMFGIVISDWSHNA
Ga0209644_100049713	F000782	AGGA	MTKQDFKSSVKGLFSVRWLKNDGTERYLHRCILGLTKKVEGQPFEHNDYVLVYKVGNGYGTQRRWGNVNPNTITHINGGRI
Ga0209644_10004974	F004908	AGGA	MATLKIIDLHQVEDGAINPKTGLTEKPSWYVRFEDMTDRVLFKSRLLEFLSIGFRKTVENFKAGKATTTQGGEARFWVVVFQDYEVRLQTKNQIMEVVTEGHRHREDEDNAKFERAEDGRKEDITLD