Scaffold Ga0209644_1000382

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000382
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8641
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100038219	F005148	GAGG	LKQKKYEEFLKRTLPESEEVECKKCERKYFDEWNLLSLAKLDMCLLCSNRNIDKETIERKYQNVK
Ga0209644_100038221	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVKDFLNDPVNKKSGWKAKDARFFRLGFQKVAKENKFNVMNIGVTPTPSRSKTNKGSMNINVKSKQKNPAPMAESIKPPTEEEKKLGALPTTPQLEAGQAQAVQYSAQSVGQICETFFNIAFTRMNVEPITQNERIALGEAYAPLCNKYLTGHSD