Scaffold Ga0209644_1000323

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000323
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9466
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F024125	Metagenome / Metatranscriptome	207	N
F047724	Metagenome	149	N
F057669	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_100032310	F047724	N/A	VSEENINYYRQVFSKDDWAIGLESDDNEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEARFEQAVLEICRTRVLQDIGADKLKGQKGGADVLAYDWREKFMGKIKDETFYTAKMRAIDTTTHAQLQISAENLTDWDSVKA
Ga0209644_100032312	F006483	N/A	MGRYIHENCTYTENHAEGTYTFTGPCVKTKKPYSVTIPGHELWDLNQGEPIMCLKSLDAGEREFVMTGLSPEGWDEVFA
Ga0209644_10003232	F024125	AGG	MILEVMKEKIYERTLDRFTGKVLTCDQCNAEDSKENEVREWGNPYDWGTICEDCDRHET
Ga0209644_10003236	F057669	GGA	MENSKTSITPSEHWNGFTFSFSNGWSVSIQQGKDHYCERGKTAEVAIFDDEDNWYAFSEVKGHIFKSEEDTYVNGWLDADAIAKIISIISQKKVDIQTSE