Scaffold Ga0209644_1000192

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1000192
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15136
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F007647	Metagenome / Metatranscriptome	347	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y
F011089	Metagenome / Metatranscriptome	295	Y
F015417	Metagenome	255	Y
F015879	Metagenome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10001921	F011089	N/A	SSRPASLPNNVLTNAKHVFAFKLNLESDVKFLEGYLGDDVWILMPKDKRNKLKDQAELSEHTFFYRDMDKDSGVIGKA
Ga0209644_100019216	F015417	GGA	MEDFQVLVGVLSSALIAVNLYVIKSLSNLCDRISHLEGKLSSQA
Ga0209644_100019222	F015879	GGAG	MKKDDVIIITCNVCGAMSHAVKTKIPKGYYVKDEFVLCKICFGDLR
Ga0209644_100019224	F005148	GGAG	VKQKKWEEHLKRILPESEEVECKKCGIKFVDDFNLVCLGALDLCLLCSNRYLDKPTIERAYNVKQ
Ga0209644_100019225	F009404	GAGG	MSSNNEPEEIQPKGESLVKYCPICGVELEDTVLTNRYWKCLSCESIFQVKVRAEN
Ga0209644_100019226	F008755	GAG	MNKSRVARDLWRKVFNDNIIDMKDGDARKQVTTDFLADPVNIKAGWKKKDARFMRLAFQKIAKEQGVNVMNLGLSPTPIRSKTQKGSLNINVKSKQKNPAPMGEQIKKPEEVKGLGALPTTPQLEGQQAQATQYSAQSVGQIFNTLFNIISARTGCSPLSQNELIALGESWSPIFNIYFSGHSLWVMPVVISAPIILSRVAEISKLKKEKEVKERYGMEDVPTKDEVKQKSHWENMSHGKNETNKK
Ga0209644_100019227	F001594	GGAG	MEKTKLTKSEYLDSLDPDNLNLEKKDLINFCHQCVDEWKANRVGNFKFIVAMELIIAGVKITPEDVLKAVWKKILVWFWDLQFQNALASDDSQLDLFRKIREQKLGSG
Ga0209644_100019228	F007647	GGAG	LDQAKINNVINAFFNSLKMDEDKMLDTGLTNNATVEFLHQATVQLVQEHPERFEQYVKFFEFGCMYLQDESDEVPEIEK