Scaffold Ga0210058_1076969

Overview

Basic Information

• Taxon OID: 3300025124
• Scaffold ID: Ga0210058_1076969
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1396
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012423	Metagenome / Metatranscriptome	280	Y
F039475	Metagenome / Metatranscriptome	163	N
F057887	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210058_10769691	F039475	N/A	EDYNPLGSVQLEFFQVDNDGNETYIGKSISGDDGRIEVSKTTLGGEGAKIVVRNAKRLSGEDIVQTSDGKYSTFIVSNDETVQEVEIVFQIKKKHNVHINVTWK
Ga0210058_10769692	F012423	N/A	MVVTKYKGDNCKIDIGISNDANSTSQNYGLSLCLKDDAGVEYTLWVITALVTTISGGFSKITDTNKIKKNKFYLEKATTYNYTATIPLPEFETEGKIYGQFGIYDGTDEDSVLIAETTYDYVYYYQKKKFSMSLSVDWK
Ga0210058_10769693	F057887	GGA	LLAATIAPNLSFSDILYDDLEVYRDVENNEYVFDGSGDIYVVSRPWNPIEPIIFISIDTEKEYTYNETTHSFLSKKIVYEAGLGIFKALSSILKKLKFTGQASRVASVLARIKNIRTGKKILYFNRKRLIWTVARNVSLLSLIYFGFSQGGKVATQTGNIVVSLIGLKMFMNFICEEAIQAASMGLFIGSGSDMDAETL