Scaffold Ga0209434_1083490

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1083490
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 934
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009213	Metagenome / Metatranscriptome	321	Y
F022669	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10834902	F009213	AGG	MNKKHYLRSTRNLYYIDEKPQLRVYYSYTTPVALMIDGHLKVSQNQWSVTTARHLTWIDGGNKKARLKREEFNELVEKHRPEPNFLKTVSSVSAMFGLMCQNDVKTKNKYQKRFFDKVQGINFPDDWESLSEEEKTKRLNGATKIGLEK
Ga0209434_10834903	F022669	AGG	MIKTFQELKQANQSYFTPENKRFFNDINYKVLMGGKSKTRFLILHTYQFSDMFGEEKKAVFVIKPITTDGKILPTVETLKELNQVKQYMKGA