NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209434_1070415

Scaffold Ga0209434_1070415


Overview

Basic Information
Taxon OID3300025122 Open in IMG/M
Scaffold IDGa0209434_1070415 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001606Metagenome664N
F033390Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209434_10704151F033390N/AGSFIYGLLPLKQLPHKGKAKTLGKSLLTAGVLSGLFMGGNPHNTNLLTPNRAITVSSSEVSYT
Ga0209434_10704152F001606GAGGMTYGYDDATFTAMSGVTEVQINDGASLTAPDPAHGLLAVIPYLAELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPIDTPLSGGEHINYYGQPLVANTVEPGIGATVIYSTTGTNGAESYYQRPTNETAAGTAINTRTQQADDISITGGNEITGLYTVVSGATATASEHDSGFSEFVSPDFNTSMPYRVAVQPTFTGLGAAANAITGGGGIMCYNMPRGQGIPLADKVTITSYYTNRDARAGGASNFINFVRYTK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.