NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209434_1064909

Scaffold Ga0209434_1064909


Overview

Basic Information
Taxon OID3300025122 Open in IMG/M
Scaffold IDGa0209434_1064909 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040060Metagenome162Y
F047632Metagenome149Y
F081218Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209434_10649091F040060AGGAGMIRVGDLVHGHWFHRKIGVVTKIDDVAKMAFVQYPDRTKCWEKLACIRKATK
Ga0209434_10649092F047632GAGGMKIGDFVQWRDQTNYRGLCGIVTKIGAHTQGMKLRRESPDIFVHWLIFPKDYGVGKGWEKVKDVELLSTGETK
Ga0209434_10649094F081218N/AVGGAYQNLKGIVIDTRTEDECWGRSLQVKVIWDDNSLGSLKQKAEGSWQRGSCLRVLSSVEQSDENEQSSSES

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