NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209434_1063530

Scaffold Ga0209434_1063530


Overview

Basic Information
Taxon OID3300025122 Open in IMG/M
Scaffold IDGa0209434_1063530 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004114Metagenome / Metatranscriptome452Y
F050301Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209434_10635301F050301N/ASKDDTFTIEYGTDGMTVAITYMNATQGWVPTIDEAVADVPYIGNPYGIFGFGGGYVSMTNLVSNAGVVATDTTGVGTGKYAPAACEYGGDKGIFGYGEYTGDNLTAETNLVSNTGVVATDVTGVGTARFAPAACEYGGDKGIFGFGSTGGSGYQSVTNLVSNVGVVGTDVTGVGTARKYIGACEYGDDKAIFAFGDGGSVTAVSNLVSNSGVVATDVTGVGSARSGPGACGYGEDKGIFGYGDTGSVTAVSNLVSNVGVVATDVTGVGTARSAMTACEYGGDKGIFGYGYNGSSAVSMTNLVSNAGVVATDVTGVGTARYALASCSYG
Ga0209434_10635302F004114GGAMSGIIGSKLNVRGSGPVGKLGTDGQVLTSAGAGKSIAYE

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