Scaffold Ga0209434_1040962

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1040962
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F011970	Metagenome	285	Y
F035483	Metagenome	172	N
F039829	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10409622	F002330	N/A	MIILDIMLKIINQINETLKIGDKFTIYYAPTYTKEGMDQTTIYKPHQYEVNVRSAIWTKDCKINRTGSLTYFDVKKNSYRTAIQTLQSIRIYINKTMYVWNESK
Ga0209434_10409623	F011970	N/A	MFGMKVNNMSHNKVWLVIEKNVYGDSQSFSVIKSHKNIDEAMQYKLCLEKLNDREKQSYFLASDVDTVLENVAHHHNKSVENGSYYEKHPEIKRPVAVK
Ga0209434_10409624	F039829	AGAAG	MSLKVKDVIRELKKFPNHYKVSLETYNENKDNEGGYDKTNCIGVDKDADAENFVVIK
Ga0209434_10409625	F035483	N/A	LAYTFFNNKASSVVSYSKAKEYKFDRDDRDEISVKDCTKQLEKWAEKQAEQFAETTPQGQRLSYLRALQKKAKQMVMEANVSTELRNSLDNLFNFVGVSWEVKLPALPKPQKKK