NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209434_1039241

Scaffold Ga0209434_1039241


Overview

Basic Information
Taxon OID3300025122 Open in IMG/M
Scaffold IDGa0209434_1039241 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012506Metagenome / Metatranscriptome280Y
F080507Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209434_10392411F012506N/AKRSRLIARTEVMRSQNQTSVGFFKEQGFEYLRADDIDGDPGDTYVDPGDPYGRTCAERNGQVYSVNDAANIDDHPNGTLNWQPMPRNYKPEETL
Ga0209434_10392413F080507AGGAGVETKEMRDQAGALLDQAQTAIDQGELETFQRLAGEAQATMEKADQIDAAASQVRKLRGDFSRPLNTIPVVDTDIAVHNPMDNTAKIKGDYKPASWVKGLPAMAQPLWVQ

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