Scaffold Ga0209434_1002916

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1002916
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7425
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F035959	Metagenome / Metatranscriptome	171	Y
F051056	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10029163	F012399	N/A	MVISTNGVRPYTVQRRRAILQFADPDYEGIHIEARLDVDLRTFLDLQALATASEDNAANLRAAFQMFGDEVLESWNLQDEDGTVLNPDAAGFLSLPPSLGTAILGAWTEAATTPGELSAS
Ga0209434_10029166	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPLLAFWLTGRRSDFETLGDIGSRVSVTVRAYFRMQDSPDVRESIEEEVWDAMVQIDSQLRSDADLGGNVTDSSVGTATVGYTNMSGGVFRTVSVPYEMELMGEVTITP
Ga0209434_10029167	F051056	N/A	MPPPPTTSFKLKGPMFDAPAQVGLGFAEAVNRGLLDLATFEGANRVKEELYGNAKDRHGRITGKLRGQVMASKVQDYLVQVDAGEAQYGSNLIYSSWVEGIGSRNERSTFKGYQMFQNAYDHINNNPQLYEEYIGDALIEAFD
Ga0209434_10029169	F035959	GGAGG	MPKAKCLVNVTFGATGEVYELGHTYDVPADLLKKYPDYFKVSKAAANKQAETEENK