Scaffold Ga0209434_1002752

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1002752
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7650
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F067209	Metagenome	126	Y
F097148	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100275210	F097148	N/A	MKPRKDRVRAKKKTHKLTERHVNMIRSQKGKQSVREIAKWFARETHYIYKVSPSMVHHILTGKRHARKEDQRSIYDLIEEEVSEEELAQLDPKKVNYD
Ga0209434_100275218	F067209	GAG	MIEDQEKTERSLDEWSNKFSAETHEATAEVAAKFMFAMSYYHGRMKLHILLHPFFYVAGFLTAYYFLGA
Ga0209434_100275219	F005620	AGGAGG	MLTPEQLIKHIETFKTFCKNNRLRLKEADDGLPVARAIGKFKEDEFFCNFKDGSIGVYAGRETQRQFTYLHKKLVKLGCIPHQIGDFEGSYDLEWMNIPPVARLLKIKKGAAKVKDPKWLRREL