Scaffold Ga0209434_1000732

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000732
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15364
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017322	Metagenome	241	Y
F022523	Metagenome	214	Y
F026408	Metagenome / Metatranscriptome	198	Y
F048970	Metagenome	147	Y
F063091	Metagenome	130	Y
F081436	Metagenome / Metatranscriptome	114	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100073217	F048970	AGGA	MKIKKTRLQEIVRGVIKEAAKEGAIQKIYRRSFARMGKKVSSGGNKNTPPFTQKIPKIGKSGPPGD
Ga0209434_100073219	F026408	AGGA	LNRRGMTLLIVLVMSSLIGISAMLLFSTVNTETMIAGNTHRINQAKISAASGLSHFTALGLTYDTLRERAGDLQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESTGYYKKADRIISVHPIKALFEGEQ
Ga0209434_100073220	F063091	GAGG	MIYKSLILLVFANLFNQAYNLEQIQCPRWVPGTDQVLPQGVSLSPELELENRVRCYCEVVKAKEAQCLARHVPATICKARTRAWVRDKLSIKEGFQLVKDVAPLPRRDRMISLEP
Ga0209434_100073222	F101067	N/A	MRVPTLDLHGLKHHEVQNAVARFIEDWLAKDLFVDIVTGNSEQMLFEAVKVIQQYGLQYNTGLPYHQGRIRVVMYDEYH
Ga0209434_100073225	F022523	AGG	MKIGDLVEFTYGRLGGQIEGMGIFMEYGTAGKHKVLFMGKGYWVPEQLIKPISIARKDPANEPLDN
Ga0209434_10007328	F081436	GGA	MKITKALLRTLIKETINEQGFRMETDFQPGQMVNWNVLAKVMKTTASGRQKVDYERMTMTGEVAELLTSGGAVGGVAIVMDPDGNSHEIEISELTLA
Ga0209434_10007329	F017322	GAGG	VSHKLIMENWRKFLKEGISDVVYHYTSGMGNAAKILEDNKFMASGGFTKEVETEYGKGKLYYFSTARTPVNAYTGTYPQGAIFKLDGRALAQKYKGVPLDYWATSKHSSKRPALISRYGKDAPSDSFEAEDRILLDEPYIDDADTYIDEIHFAVPLYKKEKDYFSGEPKRKTSKYIEWYNIEGIEKGVAVAEQRGIPYYIHVDKSTWPHVEVGKKKAFTSLSDFMQEIEKSGTEITGKPEGYGKETAAAKKRKTFGEDEVFLFVQAAHDILAGKEQFEGAGVKGDEDRTDEEARKAKGKSFFRQLAGHPDGRGRFVRDIDNPLHNISSKPKARGTLEMLASLMRSTKQKTIKDLENYLNQVYKKNHPDGDPTGYRDL