Scaffold Ga0209434_1000648

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000648
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16526
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017121	Metagenome	242	Y
F019113	Metagenome	231	Y
F021532	Metagenome	218	Y
F034892	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100064816	F019113	N/A	MEALRHTNFEVGDLVRDKLNADAGTYGLGVVVATESTGLIGEACGSSDGYADQDIPGKRYDVYFTTFERTITFHGDYLEKV
Ga0209434_100064819	F034892	AGGA	MAIEIGDLVRVRGNDWLGKPLGLVTEVRDLIHDQSGVEYTAITAVIGGQYFTFAEDTFELVNRAERKKK
Ga0209434_100064826	F017121	AGGAG	MFSLIQKILNLAQSLNALYKRIDTLEAKLERFEQLADENEALWQFLDEQKENDKLFVGSPEEFEEEFTDIMVRAMKPRGDA
Ga0209434_100064827	F021532	GAGG	LKEKWNPAAHDAPTARALEMVQVVEDEFVETPFPLSLDAQKRLLELIYNRKSGIITRQELINVLFNPEDTESGTIIKCLI