Scaffold Ga0209434_1000392

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000392
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21665
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021787	Metagenome	217	N
F024125	Metagenome / Metatranscriptome	207	N
F033643	Metagenome / Metatranscriptome	177	Y
F047724	Metagenome	149	N
F066699	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100039211	F024125	AGAAGG	MILEVMKEKKYEKTLDRFSGKVLTCDICEAEDSEENEVREWGNPYDWGVICEECDCHET
Ga0209434_100039216	F033643	N/A	MCYTTFSVRLKDMETIQQIEKPQFASSPLWPGFSMTFENGWEISVQFGGGHYCSNRMKDGSSRRSETAEVAIFAPNKDGFPREWWSYDEDIDDVVKQPDESFVNGWLTTDQVASIINIISNKNETK
Ga0209434_100039219	F047724	N/A	MDTNITYYRQVFSKDDWAIGMEGTDHDYMERRFWAFWNWKATSGKLDWWTDNFAVFWTDEARFKQAVLEIYRTQVLRDVGADTLKGQKGGADCLARDCADSFMDTMLNDEVFYTAKMRAIDSTTYAELTIGAEDLSDYDSVKA
Ga0209434_100039229	F066699	N/A	MKIKLPIYWDFKNQEESEVIVNVPNVAAKKVLMAFLMRKDYDKRREWLIKNVPEIDLNIPKELYSTLL
Ga0209434_10003924	F021787	GAG	MISCEEVFEADAFARAEFDVVCDEWLNESILAQDAEEDLVECEGCGEQWYRPEGHTGDTVPECQKCYKNDPYWC