Scaffold Ga0209434_1000195

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000195
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31336
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (83.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075976	Metagenome	118	N
F103079	Metagenome	101	Y
F103083	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100019533	F103079	AGGA	MKNKKEPLLLVNKIKKTTIYDAPEPQALMIKERESHDRYPFPLSRDQQFELLYLIRSRKSGIITREELQNIIFAEPTLH
Ga0209434_100019538	F103083	N/A	MDQKPKKGDLVSYHTSQLEILGPCQGALGIVFDGPNSHGKIAVRWLKQRPLTKLFLWNSVKNLRVESPYRPHVEPAPKSYESPVFLEPDDDEEFINDELF
Ga0209434_100019545	F075976	AGGA	MKQLFESWNKYLADNNWKYRVLNETAFSRIVTDYGDRGYIILTSDRSCEAELGLPAGKECSEEDSALQDKVNRENMEQFLSDVRAAGFGYIPTLGGYKEDLIDPKTGEPVRDEEDEIVKVDTDKPENSVIIVARPEKGRDHNKLKSVGMVLANKYGQDSFFYKPPDDVDEGAYWIKPDGSIDMQFDTFTVNDLKQQFYTQMARGPRHRFTALDENKELVFRVRTSPTSTAEARRRYGEVFLKFAE