Scaffold Ga0209434_1000138

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000138
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38709
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (86.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034142	Metagenome	175	Y
F037679	Metagenome	167	Y
F067645	Metagenome	125	Y
F084093	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_10001384	F037679	GGAG	MAFGNRMTLGKSNSQRVERTRRNFGQRFHSRPMPVQIHLRAWTPEGEMVGVAQRNDEFMVGLFDQRENALAPPVCFHGSQARSQAARLASQLTGRKVSF
Ga0209434_100013855	F067645	GGAG	VKVGDIVLLKEEYQIKYVYYGPGVITSITDYPEEGFVSHRVHWNDDFSFHGTEELELISESR
Ga0209434_10001387	F084093	GAGG	MNPQVGDIVQVKEEHWPTVGRHGGLVTRLVRWPEELRHLVDCVVFLDPNLANPVQFQTRYIEVISRG
Ga0209434_10001388	F034142	GGAG	MVKQFNVGDLVRFQRPLPGHVSADGIAAQERYVRKHMPWNFEIGIVIANDIVQGCVVSFPSRTTAVSTLSLEVL