Scaffold Ga0209434_1000089

Overview

Basic Information

• Taxon OID: 3300025122
• Scaffold ID: Ga0209434_1000089
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47783
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (95.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064204	Metagenome	129	Y
F065216	Metagenome	128	Y
F066240	Metagenome	127	Y
F081882	Metagenome	114	Y
F088746	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100008931	F066240	AGGAG	VTLMKKAEYDFNISVEFINGTNSYWTPTPLEEVEELDCHGIIDIGDDQSDFEKLISLIHEVGHAIFNNGNKLKDHRRIPLFEESLAWHLGYDYALSGGIEINLKEYAERVELALRLYTRG
Ga0209434_100008934	F088746	AGGA	MKNNSSYFTIGTLIRDGKKIGIIYREIKSGTWSDEPLFNWRTNYEIYYDDGSVCVMGLCTITRLIELGKVEIIEEKEK
Ga0209434_100008968	F064204	GGAG	MIKINRNKKAIQIGELVIVKKWDNHKGYVYSERVGIVMADEGVDDDGLEVWGRWHVALESGEYIGCSSNEIEVIEEVEDGFDRTTALNQND
Ga0209434_100008973	F065216	AGGAG	MTDKLTMILRTAAMLLEDYPDGWRGDVHEFATASAYVTSDERMWLTSGEVKAFHEELDGGAFVSEYAFVSASLDQGEPLLIIEDVDSGKV
Ga0209434_100008994	F081882	AGGAGG	MSNQIKLTIDISEELLSKILTVIALSSATLPPTLGGMPMAIRQAAPEAPERPSMGFETPKGGEQ