Scaffold Ga0209535_1100875

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1100875
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F005373	Metagenome	403	N
F033955	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_11008751	F033955	N/A	CEPMEFKSKKALREYLIDFHLQDYHEKDEYGVEDIKLIKSFSLDQICDYFDWGYKQASEQKG
Ga0209535_11008752	F005373	AGAAGG	MNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKIGYFKRGK
Ga0209535_11008753	F002928	GAGG	MKNYLVRFECQIGEYQHIDYMLFNKKKSEWGYCKEFWGITKKDELKENCFWDDWMQNAISVYSETEITDKQVKTLKELGVIY