NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1081956

Scaffold Ga0209535_1081956


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1081956 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1220
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022653Metagenome / Metatranscriptome213N
F022837Metagenome / Metatranscriptome212N
F035290Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10819561F022837GGAGGVNQLDLRMSFRDHEYHTMHDGDLILFSVEDYQPYEPENCLHEAYLFCDIIIDDKPVDHYALTASQYDAMTATVEEGSYYEY
Ga0209535_10819563F035290GGAGGMNIEKDICDYYLEVYYWEHTLVEKVVTKKEKVILASVGLYRDYELEFEDQLKILTDLRENLISAYMNWPDGEVVVELTIKEEFINA
Ga0209535_10819564F022653AGGAGMNIFKKLWVFVCLEIRGLLSDIISGNLTETEKENLFWIFSIFWCLVMVTFFILHESTGAVFDL

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