Scaffold Ga0209535_1079379

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1079379
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1252
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F011339	Metagenome	292	Y
F014263	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10793792	F014263	N/A	MSDDRYITRDMLTEESYEGNNFAEGNAVKYDLQNGEINIICFCSDESVAKGIAEGLNLLDNLEADGIDLKPTS
Ga0209535_10793793	F005611	GAGG	MKKKKYKVRAEETIYAIYETEIEAKNEKQARKIALDTCASDYLSSDWSNSAGDFTIEDIEEIE
Ga0209535_10793794	F011339	AGAAGG	MTVKHKITDWTITATVERPDGTWYDHTITDFPEHIGITINEWLQDYKTIEEESNEEEKI