Scaffold Ga0209535_1078913

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1078913
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1258
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F008924	Metagenome	326	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10789131	F008924	N/A	MKNVEEKDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETTLYKVNF
Ga0209535_10789133	F003531	GGGGG	MKRKTWTENETELARQLLKTHSYATVGKMLHRSKNSVIGQFYREKVMNGYVPDPFSKYTRKKEKDIHVNN
Ga0209535_10789134	F025411	N/A	MSITRVYRDRDNKIKVEKFSFDEVKKDLTKFFSHDNRISNRKDKNETKRLIKYSTDS
Ga0209535_10789135	F005656	AGGA	MKLKDLLNIQQIVEKRAIPSDVLEFDSTHYSRSKDMTVDILDLHLTHAIRILNNYLTDDVYPRYSNRKEINDHLDVIKDNLDDIKEVVNK