NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1076432

Scaffold Ga0209535_1076432


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1076432 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F049295Metagenome147N
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10764321F049295N/AMIEELEIEWIPEDTGAPYEMDMTRVEIDTPAHIVDKWCKKKFGHTNWARMGVMSPEELIGNPHEFDFDEGIIYFKN
Ga0209535_10764322F000720GAGGMTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKELVDTLSQDNVVGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE
Ga0209535_10764323F030928AGGCGGMKKWLKELEAYTSFCIMGFTIFICIIVIIVNCKYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD
Ga0209535_10764324F083388GGAGGMVGMLMQKRIANIEWVMKRCSPEFKKVWEYKLQQLLNKRREIEYEKMVERARSVH
Ga0209535_10764325F004988N/AMVKLVETICPRCNGNGYIVVQNEDIDCPMCEEEFMHMGGKVTTHNGFVMLPIEQTRKNVEGGRESIAKWSRETLPEKGKE
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