Scaffold Ga0209535_1065933

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1065933
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1449
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031695	Metagenome	182	Y
F055203	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10659337	F031695	AGGAGG	MINFCDEWICDGCGNTFDKTELVDSIQLPYYSCVDCEEELKQEMEKDRDY
Ga0209535_10659338	F055203	N/A	NACESCGDLHDPSDMVNPLEDFYFCYTCEDKNRELYDYMSLTRYSKKVKED