Scaffold Ga0209535_1064605

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1064605
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1472
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017490	Metagenome / Metatranscriptome	240	Y
F034192	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10646053	F034192	GGAG	MQVSQIVKKNLTIDSNSYKDLSPIMKEAVSDVFKLIEKSTGDIIKNFEGAVDKVSQHYNINIIELNNYFDKEIKEQLEEK
Ga0209535_10646054	F017490	GAGG	MAYQGSMKIKGSSSSAGSAITASNFGRAHFVRIQAQAAANTLTLKNAAGTVLGTLILITAGDSIVIEKEETDTIASSGNAVGSAVSSTR