Basic Information | |
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Taxon OID | 3300025120 Open in IMG/M |
Scaffold ID | Ga0209535_1062577 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1507 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F036969 | Metagenome / Metatranscriptome | 169 | N |
F088707 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209535_10625772 | F036969 | N/A | MNTMFSTHAVRLAYGRTLMDGGSSLLTSDGYDFEVPYKGFMVGGLSGETKIPLDICDANTFHTIWHKYAVEVRKLIKESKLSGVSYAVGTWVDNDCIVFDVSEKVATSRSAYALCIERNEDAYYDVNERKSVFIEKENDNAEA |
Ga0209535_10625776 | F088707 | N/A | KAVRRPKRTSEAGLELTQAKDGIGIGKAKKTKAVALDGSQAMPFEPRKEVEVVEPKVRKKEFMKVTLLEGETPQEAMARLRSAQIEAARLEAEALIADTAPF |
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