Scaffold Ga0209535_1053486

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1053486
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1702
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010573	Metagenome	302	Y
F025409	Metagenome	202	N
F026922	Metagenome	196	Y
F035960	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10534861	F026922	N/A	MKYLKIDTKEIEFLVNSYENWYNTFDKDGYKYVIEQLNFDQKYYNQLLSSLHNFVKGGEFYPIEIKXNIHINHKKSF
Ga0209535_10534863	F035960	AGAAGG	MKINEWGVFVERPDTSTYEIKLSEDLATKVYEYIEKLKEDDENILSGNTEGKILW
Ga0209535_10534864	F025409	AGAAGG	MKKVETEKYEGYTIEVYEQEPNVEYPLNDDDWDNLDPDCLGTHAYKVFNKENELIYEDKTHMWDIGACLENAKLDLDMDIKQQASEQKG
Ga0209535_10534865	F010573	AGAAGG	MSSFVQDWKCSKCKSDNACYEDFKDSEEGYIFECKDCKYMEVYREDVDTGKVVEDYAGYEHYYNNKQARG