Scaffold Ga0209535_1053354

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1053354
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1705
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013576	Metagenome	270	Y
F014803	Metagenome	260	Y
F020447	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10533545	F013576	GGAG	MFEDIKKEIDDTLNHMNPFENVSSDGYTGNNILPSHVKKFIADKKATQKEQELVDNYIDEIKLKQGEK
Ga0209535_10533546	F020447	AGG	MIKQIMIVSIIITFILFLGYLGIEYLISQLINDVFAIMENKNV
Ga0209535_10533547	F014803	N/A	MNKDQKEIVKRINKAFSKLYVLSNITWTPYRDELFKMNRKDEKQHRVGDWSEYHKDSASISDCAKMFTVKHIAQNLLTIEKWKIKDLLSIRKSCLYAQSIVENYGDKIRKVWLDEDIKYLANLDYVSLVNWELYQEQQEKRVA