NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1053333

Scaffold Ga0209535_1053333


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1053333 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022908Metagenome / Metatranscriptome212Y
F024812Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10533331F024812N/ASTFTVDFVNAMTNETSDLSSGSATAGLEATRAVIGRYINILSEGPLVESDKQKTYTVRTDSLGTLISGGTLQTDIRALNGAGSVTATISSATVTATDIGILTAAVIS
Ga0209535_10533332F022908N/AMLRDKTPRIYAMPKEEHMPKHFTNLKRMRWLDHDLCAGRNIKRWLWRDYHQEIILQQPPFDKYEDQSEIFTLIRHPEDRWWSGIKDMFYFMPWHIWWTNEKIMEQWPHFGRGTLRYHDIMEQIKPQHIIKCDSGLNDRVIKFAKEHGLLCFGNLPHEKALRHSKQDIKKLEDTGVRELRAWLRKNPDRQKQLDEYLEPDWQYWEQVEYQD

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