Scaffold Ga0209535_1043037

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1043037
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10430374	F018451	GAG	MSVDKYIDVQSHNPKAVVPKDYKFNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKI
Ga0209535_10430375	F056144	AGGAG	MQKLIYRGYDIVEYETEWKVELENKSIATFDKTEGVNGEASCMCEIDRIYRNERKEVDKNIQRVDAQVKLDNNIKKARNNVC
Ga0209535_10430376	F026714	AGGAG	MANTYKKLTIYLNQEQEDVLKDFDLKRIKSEQFDLLHYTVGIISSKLDGTSNKMITDVDPNKCDPVTLQYSSKTIR